Recent research progress on DNA walker-based molecular machines

Jing Wang; Dong-Xia Wang; Jia-Yi Ma; De-Ming Kong

doi:10.1360/N032018-00228

SCIENTIA SINICA Chimica

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SCIENTIA SINICA Chimica, Volume 49 , Issue 5 : 776-786(2019) https://doi.org/10.1360/N032018-00228

Recent research progress on DNA walker-based molecular machines

Jing Wang ¹, Dong-Xia Wang ¹, Jia-Yi Ma ¹, De-Ming Kong ^1,2,*

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ReceivedOct 22, 2018
AcceptedDec 4, 2018
PublishedFeb 26, 2019

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国家自然科学基金(21874075)

References

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Figure 1
DNA hybridization-based biped DNA walkers on one-dimensional orbit [20] (color online).
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Figure 2
DNA hybridization-driven 3D DNA walker. The walking DNA strand is (a) not immobilized on the nanoparticle [21], and (b) immobilized on the nanoparticle by the target [22] (color online).
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Figure 3
PSEC-driven graph traversal on a maze. (a) A maze design with ten vertices. (b) The maze is equivalent to a rooted tree with ten vertices. (c) An AFM image showing the result of a traversal experiment that generated all possible paths. (d) Typical paths found in the mixture [23] (color online).
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Figure 4
Entropy-driven 3D DNA walker [25] (color online).
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Figure 5
Nicking endonuclease-driven DNA walkers. (a) Walking operation on the DNA origami track. The above picture shows the layout of the DNA origami track. The front of the track is a green single-chain track, and the reverse side is two rows of hairpins (blue); the figure below shows the operating mechanism of the molecular machine [28]. (b–d) Walking on a three-dimensional orbit. Where in (b), the walking DNA strand is linked to AuNPs by binding to the target [29]; in the (c, d) the walking DNA strand is directly linked to the AuNP, and blocked by hybridizing with a short-stranded DNA or by designing as a hairpin structure [30,31] (color online).
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Figure 6
Exo III-driven 3D DNA walker molecular machine [32] (color online).
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Figure 7
Exo III-assisted DNA walker for CEA detection [18] (color online).
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Figure 8
Operation of Mn²⁺-driven DNA walker in living cells [38] (color online).
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Figure 9
Zn²⁺-driven DNA walker for (a) in situ imaging of miRNAs in living cells [39] and (b) design of enzyme-free, label-free miRNA sensors [40] (color online).
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Figure 10
Mg²⁺-driven DNA walker. Molecular machine design was carried out using (a) aptamer enzyme [41], (b) splitting DNAzyme [42] and (c) hairpin-locking DNAzyme strategy [43] (color online).
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Figure 11
ATP-driven DNA walker for imaging analysis of intracellular miRNAs [44] (color online).
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Figure 12
Light-driven DNA walker [45] (color online).
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Figure 13
Hybrid-driven “biped” DNA walker [17] (color online).

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Recent research progress on DNA walker-based molecular machines

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